PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003128
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 160aa    MW: 18622.6 Da    PI: 8.8993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003128genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-3380138159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg+H h+
  Lus10003128  80 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDESMVVTTYEGSHSHP 138
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3465138IPR003657WRKY domain
SuperFamilySSF1182904.05E-3072139IPR003657WRKY domain
PROSITE profilePS5081130.37775140IPR003657WRKY domain
SMARTSM007742.0E-3980139IPR003657WRKY domain
PfamPF031061.2E-2781138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEMNYTASLF PYSSSSTSSS INQDQDQHRD YYGLTMADDR TEEEAPRDGG DDDLKGENKK  60
KKKVKKPKYA FQTRSQVDIL DDGYRWRKYG QKAVKNNKFP RSYYRCTYQG CNVKKQVQRL  120
TKDESMVVTT YEGSHSHPIE KSTDNFEHIL NQMHIYASF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2970137774Probable WRKY transcription factor 4
2lex_A9e-2970137774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8300420.0EU830042.1 Linum usitatissimum clone LU0015D05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216937.11e-63hypothetical protein PRUPE_ppa016459mg
SwissprotQ9FYA21e-58WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLM5WY441e-63M5WY44_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s16750.12e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.17e-59WRKY DNA-binding protein 75